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"Ship Of The Line" tells the story of the first voyage of the "U.S.S Enterprise " NCi1701-E, under the command of Morgan Bateson. Captain Bateson, a man from the 23rd century now living in the 24th, sees what no one else can see: that the Klingon Empire is building its forces and preparing to strike against the Federation. Seizing his one chance, Bateson takes the "U.S.S. Enterprise" on a mission to counter the Klingon threat, only to be thwarted by his enemy, a Klingon who has nursed a grudge against Bateson for decades. Standing in the way of Bateson's scheme and the Klingons' plan is Captain Jean-Luc Picard who, faced with the toughest decision of his career, must choose whether to take back command of the "U.S.S Enterprise" or let the torch pass to yet another next generation!

In 1995, a Russian aircraft carrier is destroyed by a mysterious creature that just as mysteriously disappears thereafter. Three hundred years later, Counsellor Deanna Troi awakens in her quarters from a nightmare in which she senses the voices of the crew of that Russian ship, whose life-essences were somehow absorbed by the creature that destroyed them. And the nightmare heralds a danger to the Enterprise itself, for if Picard can't discover a way to communicate with the creature, it could absorb his crew just as it did the Russians.

Like the biological weapons they employ, a sinister conspiracy has spread across the Delta Quadrant and across many years of Starfleet History. Now the mysterious menace surfaces again -- to strike at the heart of the Romulan Empire.

An artificial virus has infected the entire Romulan ruling family. Ambassador Spock must put aside his efforts at unification to summon his old friend, Dr. Leonard McCoy, who discovers that the only hope for a cure lies with a long lost Romulan heir whose blood and tissues have not been contaminated by the virus. But can the heir be found before the collapse of a ruling dynasty throws the entire Empire into chaos?

The Borg are back -- and nastier than ever. No longer mindless, inhuman drones but cyborg soldiers on a mission to assimilate all intelligent life, their new goal is the complete destruction of the Federation. And in the midst of facing the Borg again, Captain Picard learns that he may be the cause of the change.

Commander Data is changing as well. For the first time in his life, Data feels a genuine emotion -- and that emotion is deadly, destructive rage. When it is revealed that the Borg are commanded by an old enemy out of Data's past, Data must choose between his allegiance tot he Federation and the one thing he wants above all else...